I've not used the hybrid cable very often, although I've been called in twice when other electricians pulled the cable then didn't know how to terminate it all so we trimmed out and tested. It is a good solution IF you actually want two cat5e and two rg6 at each location. It is a little bit bulky to work with, and as I recall it is about twice the price of individual wires, though you save some time (in theory) by pulling the one jacket.
Anyway, in a house I prefer to have the cabling all home run, usually it makes connectivity easy and if you do the custom home things such as audio systems, audio controls, modulated front door camera, CATV amplivier, etc. it is nice to have that all in one location. Also, if you home run all your cable, you actually have the flexibility that was designed into the structured wiring system. If you decide you want to put a camera in the upstairs bedroom window (aimed at the outside view of course) and modulate it on your house CATV, you can use that second RG/6 in the bundle to do so. It is easy if it all home runs.
Now for conduit, that is a good idea, IMHO. I would put the biggest you could get in there, probably 3". Be sure to nail plate it where it goes thru the top and bottom plates so that they drywallers can't drive nails or screws into it. Also you should put connectors on the ends if you use EMT, or at least plastic bushings to prevent the wire jacket from being scraped as it enters the conduit.
Alternatively you could put your cables in the wall, since they are pretty much going to be permanent, and then throw in a 2" pipe for anything else you want to add that you didn't anticipate.
Hope that Helps! It is only my opinion, based on my experience and education...I am always willing to learn, educate me!
Daron J. Wilson, RCDD
daron.wilson@lhmorris.com