When you stop and restart SQL the tempdb database is dropped and recreated. If someone increated the size of the files by using the alter database command the database would be large every time the server is restarted.
You can try shrinking the database via the DBCC SHRINKDATABASE command.
As MrDenny stated, check the default size of TEMPDB.
In Enterprise Manager, expand until you see the databases.
Right click on TempDB, select Properties. Go to the Data tab and Log tab. See what size they are set for.
Do the same for the Model database. I believe that when you restart the services, TEMPDB is rebuilt from the Model defaults. If the default sizes for Model are large, change their sizes and restart the services. See if that solves the issue.
You probably could run the ALTER DATABASE command to change the size of TEMPDB.
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