Have your lan guy put a sniffer on your network and find out whats happening.
I know of a site where they fax from a SX2000 over MSDN T1 to an early vintage 100-user 3300 in the same room, then IP over DS3 to another 3300 600 miles away then from there to an MSDN t1 to another SX2000 to another fax, 4 switches in all, tdm to ip, ip to ip, ip to tdm.
They don't have any analog ASU ports on either of their 3300s, they are early units (pre MX) and their 3300s are only used for IP trunking but still the E2T is doing the conversion at both ends (same as it would be with an ASU).
I do know both fax machines are same models, some Jap brand which might have some bearing on this.
They consistently achieve 9600 speed faxing over a distance of 600 miles.
They can't do 14.4 but they never had consistent 14.4 success anyway.
Both 3300s are running release 5 software.