Actually it is true that adding a 5400 RPM drive to an IDE system with a drive thats 7200 RPM will in fact slow the system down in varying degree's, but so will many other devices. i.e. CD-ROM, DVD-ROM, Iomega IDE zip drives, LS120's the list is actually quite large.
Replace the 5400 drive drive with another 7200 RPM drive.
Or get an external USB case for under 100 bucks, and use it for backups or an additional drive.