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- Users: cluelessNewbie
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A C prog to do pattern searching
have a good weekend... & the Dr. Wife too. /*##########################################################################*/ /* BEWARE ONLY TESTED ON LINUX... DUMB & DIRTY CODE FOLLOWS */ /*##########################################################################*/ #include <stdio.h> #include...- cluelessNewbie
- Post #32
- Forum: C
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A C prog to do pattern searching
I should be perfectly clear here... we are currently counting the whitespace including the end-of-line characters. To change this to only count amino acid postions... comment out line #17 uncomment line #18 and uncomment lines #51-56 the printf statement added in my previous post will now look...- cluelessNewbie
- Post #30
- Forum: C
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A C prog to do pattern searching
...currently unprocessed & we're using the whitespace is in the pattern method. change line 17 to read... char pat[256] = "R[ \t\n\r]*.[ \t\n\r]*R[ \t\n\r]*.[ \t\n\r]*.[ \t\n\r]*[ST]"; or rather just change the last [RS] to [ST]. the REG_ICASE flag should handle the...- cluelessNewbie
- Post #29
- Forum: C
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A C prog to do pattern searching
...position in the peptide so I've given you both options. The amino acid postion option has been commented out & the file postion option is active. /*##########################################################################*/ /* BEWARE ONLY TESTED ON LINUX... DUMB & DIRTY CODE FOLLOWS */...- cluelessNewbie
- Post #26
- Forum: C
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A C prog to do pattern searching
nevj, OK some success, good... & I'm learning what I need to... even better! 1) Realize that I'm taking you down a *nixie path. I know some Windows libraries but I'm severly out of practice. In particular, the libraies I use for file i/o may be *nixie only. I'll try & steer clear of this but...- cluelessNewbie
- Post #25
- Forum: C
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A C prog to do pattern searching
...with: gcc -o ten ten.c Let's reduce the possible source of errors & shrink this proggie a bit. We can add back functionality later. Try... /*##########################################################################*/ /* BEWARE ONLY TESTED ON SuSe/LINUX... DUMB & DIRTY CODE FOLLOWS */...- cluelessNewbie
- Post #23
- Forum: C
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A C prog to do pattern searching
as I said I need to learn this stuff so here's a proggie I did for learnin' purposes. I may or may not be what you need. /*##########################################################################*/ /* BEWARE ONLY TESTED ON UNIX... DUMB & DIRTY CODE FOLLOWS */...- cluelessNewbie
- Post #17
- Forum: C
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removing the last character
or if the "|" char is sometimes there & sometimes not there... while (my $line = <INFILE>){ chomp $line; $line =~ s/\|$//; #replaces chop $line; }- cluelessNewbie
- Post #3
- Forum: Perl
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A C prog to do pattern searching
I like that. you're solving the problem given & not potentially imaginary future senarios of what the problem will become. code to study. thx.- cluelessNewbie
- Post #13
- Forum: C
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Need help with decoding x86 instructions!
in the appendix of the instuction set reference (vol #2) from the intel web site. http://developer.intel.com/design/Pentium4/manuals/ these are rather large pdf files but worth the download if you're serious about asm programming. the instruction set has some oddities due to historical...- cluelessNewbie
- Post #2
- Forum: Assembly
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simple program.. need help
compounded when?? aww shucks rather than pretending I know all about interest... how about someone who does know what they're talking about http://mathforum.org/dr.math/faq/faq.interest.html if that doesn't help i'll try & clear things up more but before i do help further you have to post code...- cluelessNewbie
- Post #5
- Forum: C
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simple program.. need help
The ceiling function rounds up. double ceil(double x); month = cail(month);- cluelessNewbie
- Post #2
- Forum: C
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A C prog to do pattern searching
Matt, BM is *THE* method to use if you're doing exact string matching. However, it starts to lose it's edge when there are wildcards. If you're into that kind of thing have a look at the "agrep" algo or the "shift or" method. both can be adapted for low numbers of mismatches...- cluelessNewbie
- Post #9
- Forum: C
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A C prog to do pattern searching
...of unix: Linux, FreeBSD, Solaris Unix, etc. Fair warning: after a quick look-see for regular expression libraries in C it appears that the unix/*nixie world & the Windows world for regualr expression libraries are a bit different. So there will be annoying porting issues, likely minor but...- cluelessNewbie
- Post #8
- Forum: C
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A C prog to do pattern searching
Knowing the field *very* well I'd bet $$ to donuts that after nevj gives his proggie to Dr. Wife. She is going to say that base E can be replaced by base D here & just change for this & then for that replacement rule (because it's easy to replace some hydrophibic bases)... & the creatures would...- cluelessNewbie
- Post #5
- Forum: C
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A C prog to do pattern searching
fasta format on protein data? anywho... there are c-libs for doing full blown pattern search in the *nixies. have a look-see at the doc on... #include <fnmatch.h> I haven't gotten around to using it myself yet but it's on my to-do list.- cluelessNewbie
- Post #3
- Forum: C
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Crash-happy VGA writing
mmm... you're testing seems thorough... I like that. I'm not much on segmented memory models & I don't have dos @ work so I can't test this but it seems to me that you're blowing past the end of your segment. You can test this by printing your addresses out & seeing where it dies. Off-hand...- cluelessNewbie
- Post #2
- Forum: Assembly
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Opcodes for 80188 instructions
google? hotbot? yahoo? dogpile?... Here's one http://www.rcollins.org/intel.doc/186Manuals.html- cluelessNewbie
- Post #3
- Forum: Assembly
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Newbie needing some help
for class you gotta roll your own but i'm not against helping you have three things to check on the year >, =, & <. the < & > conditions you know what to do. it's only on the = clause you have to deal with the month. the month check are analogous & only go to day compare on months = then go...- cluelessNewbie
- Post #6
- Forum: C
