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  1. tsbatth

    loop help

    i set $mlength = @RNAseq but after it gives me the number of start codons, the program freezes well dos freezes and nothing more, i have to restart dos
  2. tsbatth

    loop help

    thanks, but i have to do it this way so i can get the position of the start codon, anyway i can make this work?
  3. tsbatth

    loop help

    yea
  4. tsbatth

    loop help

    i am trying to find the start codon in a sequence, the start codon is a 3 letter sequence from rna 'AUG', i dont understand this mlength part, i got this piece of code from somewhere else. My guess would be that its supposed to be position of start codon?
  5. tsbatth

    loop help

    how do i establish it?
  6. tsbatth

    loop help

    hi im writing this code to determine number of start codons after but I keep getting an error, this is the following code RNAseq = split('', $RNA); $nstart = 0; #number of start codons $start = 'AUG'; for ($i=0; $i<$mlength -2; $i ++) { @codon = @RNAseq[$i, $i+1, $i+2]; $cod = join(''...
  7. tsbatth

    Complement command help

    Hey I wrote the following program that checks for a dna sequence (letters ATGC only), it converts all lower atgc to uppercase and checks to see if its only dna sequence, if it is not dna sequence it terminates, however it says that to all sequences I write, even if I input correct dna sequence...

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